PepSite: prediction of peptide-binding sites from protein surfaces.
Leonardo G. TrabucoStefano LiseEvangelia PetsalakiRobert B. RussellPublished in: Nucleic Acids Res. (2012)
Keyphrases
- saccharomyces cerevisiae
- transcription factors
- binding sites
- drosophila melanogaster
- protein interaction
- protein protein interactions
- regulatory networks
- dna binding
- gene expression
- protein function
- transcriptional regulation
- protein protein
- protein complexes
- protein interaction networks
- dna sequences
- microarray
- amino acids
- genome wide
- component analysis
- predicting protein
- sequence data
- protein classification
- sequence alignment
- drug design
- motif discovery
- systems biology
- protein families
- high throughput
- biological processes
- biological sequences
- protein structure prediction
- functional modules
- regulatory elements
- statistical significance
- transcription factor binding sites
- computational methods
- co occurrence
- mass spectrometry
- tandem mass spectra
- mhc class ii
- contact map
- computational approaches
- network topology
- statistical analysis
- cis regulatory
- experimental conditions
- influenza virus
- protein sequences