Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform.
José Salavert TorresIgnacio Blanquer EspertAndrés Tomás DominguezVicente HernándezIgnacio MedinaJoaquín TárragaJoaquín DopazoPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2012)
Keyphrases
- sequence alignment
- reference genome
- multiple sequence alignment
- hidden markov models
- global alignment
- genetic algorithm
- general purpose
- phylogenetic analysis
- multiple alignment
- variable length
- dynamic time warping
- image alignment
- real time
- compression algorithm
- parallel processing
- sequential patterns
- microarray
- neural network