ISEA: Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution.
Min LiZhongxiang LiaoYiming HeJianxin WangJunwei LuoYi PanPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2017)
Keyphrases
- experimental evaluation
- detection algorithm
- optimization algorithm
- scales linearly
- information sources
- learning algorithm
- computational cost
- final result
- preprocessing
- computational complexity
- space complexity
- cost function
- significant improvement
- high accuracy
- prior information
- times faster
- gradient information
- expectation maximization
- matching algorithm
- dynamic programming
- np hard
- objective function
- spatial information
- particle swarm optimization
- maximum likelihood
- convergence rate
- recognition algorithm
- optimal solution