Parallel Decompression of Gzip-Compressed Files and Random Access to DNA Sequences.
Maël KerbiriouRayan ChikhiPublished in: IPDPS Workshops (2019)
Keyphrases
- dna sequences
- random access
- data compression
- file structure
- compressed text
- compression ratio
- compressed data
- file size
- processing elements
- hard disk
- dna computing
- compressed domain
- compression scheme
- dna sequencing
- compression algorithm
- image compression
- tandem repeats
- memory size
- flash memory
- human genome
- biological sequences
- motif discovery
- coding regions
- gene structure prediction
- multiview video coding
- problems in computational biology
- sequence patterns
- binding sites
- databases
- transcription factors
- multi dimensional
- lower bound
- rna sequences
- genomic sequences
- lossless compression
- shared memory
- image quality
- xml documents