Fast motif discovery in short sequences.
Honglei LiuFangqiu HanHongjun ZhouXifeng YanKenneth S. KosikPublished in: ICDE (2016)
Keyphrases
- motif discovery
- biological sequences
- recurring patterns
- sequence analysis
- dna sequences
- motif finding
- data mining tasks
- computational biology
- binding sites
- sequence databases
- protein sequences
- pattern discovery
- sequence data
- multiobjective optimization
- sequential patterns
- transcription factor binding sites
- molecular biology
- databases
- multiple sequence alignment
- biological networks
- sequence alignment
- biological data
- data mining algorithms
- similarity search