SPATA: A Seeding and Patching Algorithm for Hybrid Transcriptome Assembly.
Tin Chi NguyenZhiyu ZhaoDongxiao ZhuPublished in: CoRR (2013)
Keyphrases
- times faster
- objective function
- np hard
- detection algorithm
- cost function
- learning algorithm
- search space
- k means
- matching algorithm
- optimization algorithm
- computationally efficient
- worst case
- expectation maximization
- linear programming
- improved algorithm
- experimental study
- probabilistic model
- computational cost
- experimental evaluation
- dynamic programming
- preprocessing
- computational complexity
- particle swarm optimization
- segmentation algorithm
- clustering method
- classification algorithm
- significant improvement
- convergence rate
- estimation algorithm