DeepPeptide predicts cleaved peptides in proteins using conditional random fields.
Felix TeufelJan C. RefsgaardChristian T. MadsenCarsten StahlhutMads GrønborgOle WintherDennis MadsenPublished in: Bioinform. (2023)
Keyphrases
- amino acids
- mass spectrometry
- physicochemical properties
- protein sequences
- protein function
- hiv protease
- amino acid sequences
- tandem mass spectra
- protein structure
- secondary structure
- protein protein interactions
- protein structure prediction
- protein folding
- mass spectrometry data
- high throughput
- named entity recognition
- sequence labeling
- ms ms
- computational biology
- protein structure alignment
- machine learning
- coarse grained
- network topology