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High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs.
Abdulrhman Aljouie
Ling Zhong
Usman Roshan
Published in:
Int. J. Comput. Biol. Drug Des. (2020)
Keyphrases
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sequence alignment
pairwise
smith waterman
gpu accelerated
dynamic programming
markov random field
pattern matching
similarity measure
real time
dynamic time warping
statistical significance
protein structure prediction
phylogenetic analysis