GPU-Friendly Parallel Genome Matching with Tiled Access and Reduced State Transition Table.
Yunho OhDoohwan OhWon Woo RoPublished in: Int. J. Parallel Program. (2013)
Keyphrases
- state transition
- parallel implementation
- state transitions
- state transition model
- parallel computation
- state space
- input output
- black box
- parallel processing
- parallel computing
- hidden markov models
- parallel programming
- graphics processing units
- probability distribution
- matching algorithm
- cluster of workstations
- finite state machines
- markov chain
- real time
- parallel algorithm
- sequence data
- database
- pattern matching
- human genome
- access control
- test set
- parallel architectures
- transition model