An algorithm for mapping short reads to a dynamically changing genomic sequence.
Costas S. IliopoulosDerrick G. KourieLaurent MouchardThemba K. MusombukaSolon P. PissisCorné de RidderPublished in: J. Discrete Algorithms (2012)
Keyphrases
- dynamically changing
- detection algorithm
- experimental evaluation
- learning algorithm
- objective function
- np hard
- particle swarm optimization
- neural network
- theoretical analysis
- high accuracy
- k means
- worst case
- simulated annealing
- input data
- preprocessing
- expectation maximization
- optimization algorithm
- significant improvement
- lower bound
- clustering algorithm
- genetic algorithm
- matching algorithm
- convergence rate
- genome wide
- databases