Fast Hybrid Data Structure for a Large Alphabet K-Mers Indexing for Whole Genome Alignment.
Rostislav HrivnákPetr GajdosVáclav SnáselPublished in: IEEE Access (2021)
Keyphrases
- data structure
- geometric hashing
- secondary memory
- inverted index
- image alignment
- pattern matching
- indexing structure
- dynamic time warping
- efficient data structures
- compressed text
- space efficient
- indexing method
- database
- indexing techniques
- r tree
- main memory
- information retrieval
- data types
- index structure
- indexing scheme
- database systems
- hash table
- data sets
- b tree
- image database
- multiple sequence alignment
- multi dimensional
- indexing methods
- information retrieval systems
- multidimensional data
- hybrid learning