BOSS: a novel scaffolding algorithm based on an optimized scaffold graph.
Junwei LuoJianxin WangZhen ZhangMin LiFang-Xiang WuPublished in: Bioinform. (2017)
Keyphrases
- experimental evaluation
- dynamic programming
- cost function
- detection algorithm
- linear programming
- optimal solution
- graph model
- high accuracy
- preprocessing
- shortest path problem
- computational cost
- breadth first search
- recognition algorithm
- search space
- objective function
- graph structure
- optimization algorithm
- worst case
- graph based algorithm
- np hard
- finding the shortest path
- graph construction
- graph search
- random graphs
- maximum flow
- minimum spanning tree
- significant improvement
- graph theory
- tree structure
- expectation maximization
- evolutionary algorithm
- knn
- probabilistic model
- k means
- prior knowledge