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Smith-Waterman Protein Search with OpenCL on an FPGA.

Enzo RucciCarlos GarcíaGuillermo Botella JuanArmando De GiustiMarcelo R. NaioufManuel Prieto-Matías
Published in: TrustCom/BigDataSE/ISPA (3) (2015)
Keyphrases
  • smith waterman
  • search algorithm
  • sequence alignment
  • subsequence matching
  • hardware implementation
  • biological sequences
  • optimal solution
  • distance measure
  • euclidean distance
  • protein sequences