Code Optimization of the Subroutine to Remove Near Identical Matches in the Sequence Database Homology Search Tool PSI-BLAST.
Mats AspnäsKimmo MattilaKristoffer OsowskiJan WesterholmPublished in: J. Comput. Biol. (2010)
Keyphrases
- search tools
- sequence databases
- protein sequences
- sequence alignment
- approximate string matching
- amino acid sequences
- psi blast
- sequence analysis
- content analysis
- personal information
- amino acids
- end users
- metadata
- sequence data
- biological sequences
- sequential patterns
- secondary structure
- similarity search
- protein secondary structure prediction
- computational biology
- file system
- keyword search
- sequential pattern mining
- biological data
- statistically significant
- dynamic programming