GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
Alexey A. GritsenkoJurgen F. NijkampMarcel J. T. ReindersDick de RidderPublished in: Bioinform. (2012)
Keyphrases
- preprocessing
- optimization algorithm
- learning algorithm
- estimation algorithm
- times faster
- experimental evaluation
- dynamic programming
- significant improvement
- computational complexity
- data sets
- input data
- clustering method
- cost function
- improved algorithm
- selection algorithm
- similarity measure
- theoretical analysis
- computationally efficient
- optimal solution
- detection algorithm
- classification algorithm
- recognition algorithm
- probabilistic model
- computational cost
- search space