ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text.
Burr SettlesPublished in: Bioinform. (2005)
Keyphrases
- medline abstracts
- open source
- manually annotated
- named entities
- biomedical literature
- keywords
- text mining
- entity extraction
- annotated corpus
- relation extraction
- biological processes
- text fragments
- disease genes
- text documents
- gene expression
- dna binding
- protein protein interaction networks
- protein protein interactions
- gene ontology
- protein interaction
- information extraction systems
- related documents
- biological entities
- natural language processing
- saccharomyces cerevisiae
- genomic data
- protein sequences
- microarray data
- interaction networks
- entity ranking
- gene function
- textual information
- part of speech
- computational methods
- arabidopsis thaliana
- gene expression data
- named entity recognizer