Integrating Structure and Sequence: Protein Graph Embeddings via GNNs and LLMs.
Francesco CeccarelliLorenzo GiustiSean B. HoldenPietro LiòPublished in: ICPRAM (2024)
Keyphrases
- graph structure
- graph representation
- sequence similarity
- sequence analysis
- sequence alignment
- tree shaped
- random walk
- tree structure
- tertiary structure
- protein sequences
- amino acids
- graph model
- protein structural
- multiple sequence alignment
- contact map
- dependency graph
- structural features
- genomic sequences
- graphical representation
- dimensionality reduction
- structural properties
- directed graph
- high dimensional data
- distance measure