An optimized and low-cost FPGA-based DNA sequence alignment - A step towards personal genomics.
Hurmat Ali ShahLaiq HasanNasir AhmadPublished in: EMBC (2013)
Keyphrases
- sequence alignment
- low cost
- binding sites
- sequence analysis
- protein sequences
- pairwise
- sequence databases
- comparative genomics
- dna sequences
- dynamic programming
- phylogenetic analysis
- gpu accelerated
- gene expression
- recent advances
- embedded systems
- smith waterman
- real time
- computational biology
- association rules
- transcription factors
- multiple alignment
- hardware implementation
- multiple sequence alignment
- motif discovery
- amino acids
- statistical analysis
- learning algorithm
- data sets