VPsearch: fast exact sequence similarity search for genomic sequences.
Joris VankerschaverSteven J. KernRobert KernPublished in: J. Open Source Softw. (2022)
Keyphrases
- similarity search
- genomic sequences
- dna sequences
- metric space
- high dimensional
- similarity measure
- distance function
- multimedia databases
- high dimensional data
- false dismissal
- cross view
- efficient similarity search
- query processing
- similarity searching
- similarity queries
- exact match
- indexing techniques
- knn
- previously unknown
- hash functions
- r tree
- dynamic time warping
- metric access methods
- locality sensitive hashing
- similarity retrieval
- nearest neighbor
- pattern recognition
- sequence databases
- indexing structure
- causal relationships
- data sets