MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction.
Nan LiRichard I. AinsworthMeixin WuBo DingWei WangPublished in: Bioinform. (2016)
Keyphrases
- drug design
- protein interaction
- amino acids
- mass spectrometry
- protein classification
- high throughput
- protein structure prediction
- tandem mass spectra
- remote homology detection
- contact map
- mhc class ii
- protein sequences
- drug discovery
- subcellular localization
- support vector
- support vector machine svm
- contact maps
- mass spectra
- solvent accessibility
- protein secondary structure
- virtual screening
- protein protein interactions
- predicting protein
- protein protein
- string kernels
- amino acid residues
- support vector machine
- prediction accuracy
- amino acid composition
- tandem mass spectrometry
- computational methods
- protein structure
- kernel function
- protein function
- prediction model
- protein interaction data
- gene expression
- svm classifier
- knn
- feature vectors
- physicochemical properties
- machine learning
- ms ms
- secondary structure
- predictive model
- feature ranking
- kernel methods
- amino acid sequences
- protein complexes
- protein tertiary structure
- sequence alignment
- training data