Prediction of Protein-DNA Binding Sites Based on Protein Language Model and Deep Learning.
Kaixuan ShanXiankun ZhangChen SongPublished in: ICIC (LNBI 2) (2024)
Keyphrases
- language model
- deep learning
- binding sites
- protein interaction
- dna binding
- protein protein
- regulatory elements
- transcription factor binding sites
- dna sequences
- gene expression
- n gram
- transcription factors
- probabilistic model
- sequence data
- unsupervised learning
- speech recognition
- query expansion
- protein function
- information retrieval
- retrieval model
- protein protein interactions
- machine learning
- weakly supervised
- genome wide
- protein sequences
- mental models
- statistical significance
- protein structure
- microarray
- test collection
- genomic sequences
- pattern recognition
- reinforcement learning
- image segmentation