A fast hybrid short read fragment assembly algorithm.
Bertil SchmidtRanjan SinhaBryan Beresford-SmithSimon J. PuglisiPublished in: Bioinform. (2009)
Keyphrases
- detection algorithm
- learning algorithm
- objective function
- cost function
- high accuracy
- single pass
- convergence rate
- times faster
- experimental study
- theoretical analysis
- computational cost
- optimal solution
- computational complexity
- search space
- np hard
- clustering method
- particle swarm optimization
- worst case
- probabilistic model
- simulated annealing
- expectation maximization
- k means
- optimization algorithm
- support vector
- tree structure
- path planning
- experimental evaluation
- memory requirements
- multiscale
- improved algorithm
- decision trees