A pattern-based nearest neighbor search approach for promoter prediction using DNA structural profiles.
Yanglan GanJihong GuanShuigeng ZhouPublished in: Bioinform. (2009)
Keyphrases
- nearest neighbor search
- nearest neighbor
- sequential search
- escherichia coli
- high dimensional
- prediction accuracy
- binding sites
- feature space
- similarity search
- image retrieval
- memory based learning
- cost model
- metric space
- index structure
- dna sequences
- search methods
- locality sensitive hashing
- rna sequences
- particle swarm optimization
- optimization problems