atSNP: transcription factor binding affinity testing for regulatory SNP detection.
Chandler ZuoSunyoung ShinSündüz KelesPublished in: Bioinform. (2015)
Keyphrases
- transcription factors
- dna binding
- genome wide
- chip seq
- dna sequences
- binding sites
- high throughput
- transcription factor binding sites
- cis regulatory
- microarray
- transcriptional regulation
- component analysis
- gene regulation
- gene expression
- human genome
- systems biology
- computational biology
- biomedical literature
- regulatory networks
- single nucleotide polymorphisms
- transcriptional regulatory
- pairwise
- biological data
- factor analysis
- co occurrence
- natural language processing
- regulatory elements
- data analysis
- machine learning