ProtiGeno: a prokaryotic short gene finder using protein language models.
Tony TuGautham KrishnaAmirali AghazadehPublished in: CoRR (2023)
Keyphrases
- language model
- language modeling
- sequence alignment
- protein protein interaction networks
- homo sapiens
- n gram
- speech recognition
- probabilistic model
- document retrieval
- information retrieval
- microarray
- language modelling
- retrieval model
- genomic sequences
- protein sequences
- gene expression
- test collection
- protein interaction
- query expansion
- protein structure
- amino acids
- statistical language models
- vector space model
- smoothing methods
- pseudo relevance feedback
- ad hoc information retrieval
- query terms
- language models for information retrieval
- gene ontology
- biomedical literature
- translation model
- gene expression data
- hidden markov models
- document ranking
- relevance model
- protein protein interactions
- feature selection
- retrieval effectiveness
- context sensitive
- keywords