Barnacle: An Assembly Algorithm for Clone-based Sequences of Whole Genomes
Vicky ChoiMartin Farach-ColtonPublished in: CoRR (2003)
Keyphrases
- improved algorithm
- probabilistic model
- learning algorithm
- optimal solution
- preprocessing
- search space
- computational cost
- tree structure
- detection algorithm
- expectation maximization
- high accuracy
- experimental evaluation
- cost function
- significant improvement
- k means
- computational complexity
- particle swarm optimization
- theoretical analysis
- objective function
- frequent sequences
- np hard
- sequence analysis
- string matching
- similarity measure
- convergence rate
- times faster
- ant colony optimization
- clustering method
- pairwise
- genetic algorithm
- dynamic programming