Accelerating Smith-Waterman Alignment of Species-Based Protein Sequences on GPU.
Xiaowen FengHai JinRan ZhengLei ZhuWeiqi DaiPublished in: Int. J. Parallel Program. (2015)
Keyphrases
- smith waterman
- protein sequences
- biological sequences
- sequence alignment
- psi blast
- genome sequences
- computational biology
- sequence databases
- amino acids
- multiple sequence alignment
- multiple alignment
- protein structure
- protein classification
- sequence analysis
- secondary structure
- phylogenetic trees
- protein families
- subsequence matching
- protein structure prediction
- physicochemical properties
- protein function
- amino acid sequences
- motif discovery
- remote homology detection
- molecular biology
- protein secondary structure prediction
- dna sequences
- multiple sequence alignments
- machine learning
- grammatical inference
- data analysis
- similarity measure