Computational prediction of plasma protein binding of cyclic peptides from small molecule experimental data using sparse modeling techniques.
Takashi TajimiNaoki WakuiKeisuke YanagisawaYasushi YoshikawaMasahito OhueYutaka AkiyamaPublished in: BMC Bioinform. (2018)
Keyphrases
- experimental data
- hiv protease
- amino acids
- binding peptides
- mhc class ii
- physicochemical properties
- drug discovery
- mass spectrometry
- mass spectrometry data
- tandem mass spectra
- coarse grained
- protein secondary structure
- subcellular localization
- dynamic model
- mass spectra
- protein protein interactions
- prediction accuracy
- physical models
- contact map
- drug design
- contact maps
- protein structure prediction
- mathematical models
- protein sequences
- fine grained
- sequence analysis
- experimentally determined
- artificial neural networks
- ms ms
- data mining
- major histocompatibility complex