Clustering metagenomic sequences with interpolated Markov models.
David R. KelleySteven L. SalzbergPublished in: BMC Bioinform. (2010)
Keyphrases
- markov models
- hidden markov models
- sequence classification
- markov model
- maximum entropy
- sequence data
- higher order
- low order
- clustering algorithm
- k means
- hidden state
- sequence analysis
- sequence prediction
- conditional random fields
- genomic sequences
- markov chain
- special case
- data objects
- text documents
- generative model
- optimal solution