A novel two-level particle swarm optimization approach to train the transformational grammar based hidden Markov models for performing structural alignment of pseudoknotted RNA.
Soniya LalwaniRajesh KumarNilama GuptaPublished in: Swarm Evol. Comput. (2015)
Keyphrases
- hidden markov models
- particle swarm optimization
- rna sequences
- rna secondary structures
- stochastic context free grammars
- profile hidden markov models
- secondary structure
- markov models
- speech recognition
- context free grammars
- viterbi algorithm
- dna sequences
- markov model
- gesture recognition
- random effects
- continuous hidden markov models
- sequential data
- hidden states
- sequence classification
- sequence alignment
- protein sequences
- conditional random fields
- genetic algorithm
- automatic speech recognition
- computational methods
- visual speech recognition
- discriminative training
- hierarchical hidden markov model
- bayesian networks