An efficient algorithm for the extraction of HGVS variant descriptions from sequences.
Jonathan K. VisMartijn VermaatPeter E. M. TaschnerJoost N. KokJeroen F. J. LarosPublished in: Bioinform. (2015)
Keyphrases
- search algorithm
- search space
- learning algorithm
- computational cost
- computationally efficient
- computational complexity
- times faster
- dynamic programming
- optimization algorithm
- worst case
- memory efficient
- preprocessing
- improved algorithm
- k means
- neural network
- expectation maximization
- objective function
- theoretical analysis
- long sequences
- recognition algorithm
- matching algorithm
- detection algorithm
- linear programming
- high accuracy
- hidden markov models
- optimal solution
- input data
- simulated annealing
- sequential patterns
- scheduling problem
- estimation algorithm
- cost function
- frequent sequences