A Practical Algorithm for Optimal Inference of Haplotypes from Diploid Populations.
Dan GusfieldPublished in: ISMB (2000)
Keyphrases
- dynamic programming
- learning algorithm
- optimal solution
- worst case
- cost function
- experimental evaluation
- computational complexity
- k means
- similarity measure
- times faster
- detection algorithm
- significant improvement
- computational cost
- np hard
- globally optimal
- simulated annealing
- linear programming
- exhaustive search
- closed form
- preprocessing
- inference mechanism
- bayesian inference
- convergence rate
- matching algorithm
- lower bound
- segmentation algorithm
- high accuracy
- probabilistic model