LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs.
Sizhen LiNing DaiHe ZhangApoorv MalikDavid H. MathewsLiang HuangPublished in: CoRR (2023)
Keyphrases
- rna sequences
- rna secondary structure prediction
- secondary structure
- rna secondary structures
- protein folding
- dna sequences
- protein sequences
- multiple sequence alignment
- amino acid sequences
- free energy
- multiple alignment
- worst case
- computational methods
- structural features
- protein structure
- simple polygon
- data sets
- remote homology detection
- image alignment
- amino acids
- bayesian networks
- genetic algorithm
- machine learning
- neural network