LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes.
Zeev FrenkelEtienne PauxDavid I. MesterCatherine FeuilletAbraham B. KorolPublished in: BMC Bioinform. (2010)
Keyphrases
- learning algorithm
- computational complexity
- high efficiency
- optimization algorithm
- dynamic programming
- objective function
- recognition algorithm
- experimental evaluation
- mapping function
- computationally intensive
- linear programming
- simulated annealing
- k means
- preprocessing
- search space
- cost function
- times faster
- computational efficiency
- computational cost
- matching algorithm
- ant colony optimization
- detection algorithm
- segmentation algorithm
- theoretical analysis
- computationally efficient
- significant improvement
- np hard
- tree structure
- probabilistic model
- improved algorithm
- optimal solution
- comparative analysis
- data sets