Mapping Gene/Protein Names in Free Text to Biomedical Databases.
Hongfang LiuManabu ToriiZhang-Zhi HuCathy H. WuPublished in: ICDM Workshops (2007)
Keyphrases
- free text
- information extraction
- databases
- medline abstracts
- information extraction systems
- biological entities
- biomedical literature
- natural language processing
- structured data
- named entities
- entity extraction
- text mining
- semi structured
- computer assisted assessment
- biological knowledge
- microarray
- semi structured documents
- cellular processes
- protein protein interaction networks
- protein protein interactions
- sequence alignment
- protein interaction
- medical records
- text analytics
- gene expression
- knowledge discovery
- relational databases
- clinical guidelines
- homo sapiens
- interaction networks
- patient records
- data model
- database systems
- regulatory networks
- genomic sequences
- automatic extraction
- high throughput
- data sources
- data analysis
- database
- relation extraction
- gene regulatory networks
- amino acids
- protein structure
- natural language
- information retrieval
- machine learning