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MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of residues.
Toshihide Hara
Keiko Sato
Masanori Ohya
Published in:
BMC Bioinform. (2010)
Keyphrases
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sequence alignment
pairwise
k means
learning algorithm
similarity measure
dynamic programming
worst case
optimal solution
amino acids
probabilistic model
semi supervised
expectation maximization
em algorithm
sample size
protein sequences
binding sites
reinforcement learning
gpu accelerated