Variable-Length Protein Sequence Motif Extraction Using Hierarchically-Clustered Hidden Markov Models.
Cody HudsonBernard ChenPublished in: ICMLA (1) (2013)
Keyphrases
- hidden markov models
- variable length
- protein sequences
- fixed length
- structural motifs
- computational biology
- protein structural
- protein structure
- n gram
- amino acids
- biological sequences
- bitstream
- secondary structure
- viterbi algorithm
- hierarchical structure
- protein folding
- markov model
- sequential data
- human motion
- molecular biology
- information extraction
- multiple sequence alignment
- data mining
- baum welch
- motif discovery
- sequence databases
- sequence alignment