GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.
Giacomo B. MarinoMichael NgaiDaniel J. B. ClarkeReid H. FleishmanEden Z. DengZhuorui XieNasheath AhmedAvi Ma'ayanPublished in: Nucleic Acids Res. (2023)
Keyphrases
- cell lines
- expression profiles
- protein protein interactions
- cis regulatory
- gene networks
- cellular processes
- gene expression levels
- sequence alignment
- microarray
- gene expression
- gene prediction
- regulatory networks
- homo sapiens
- genomic sequences
- gene expression data
- medical images
- protein interaction
- histopathological images
- saccharomyces cerevisiae
- gene ontology
- biological entities
- cell nuclei
- protein protein interaction networks
- interaction networks
- protein functional
- protein function
- high throughput
- gene sets
- dna binding
- dna sequences
- image analysis
- transcriptional regulation
- gene regulatory networks
- signaling pathways
- protein sequences
- protein structure
- differential expression
- gene ontology terms
- sequence analysis
- transcription factor binding sites
- protein interaction networks
- protein structure prediction
- automated analysis
- genome wide
- computational methods
- knowledge discovery