RNAknot: A new algorithm for RNA secondary structure prediction based on genetic algorithm and GRASP method.
Abdelhakim El FatmiAli BekriSaid BenhlimaPublished in: J. Bioinform. Comput. Biol. (2019)
Keyphrases
- dynamic programming
- rna secondary structure prediction
- matching algorithm
- input data
- k means
- objective function
- genetic algorithm
- energy function
- similarity measure
- rna secondary structures
- probabilistic model
- optimal solution
- closed form
- expectation maximization
- simulated annealing
- prior information
- em algorithm
- parameter estimation
- image matching
- machine learning methods
- inductive logic programming
- pairwise