A Compact Mathematical Programming Formulation for DNA Motif Finding.
Carl KingsfordElena ZaslavskyMona SinghPublished in: CPM (2006)
Keyphrases
- mathematical programming
- motif finding
- biological sequences
- mixed integer linear
- motif discovery
- robust optimization
- mixed integer linear programming
- linear programming
- dna sequences
- sequence data
- binding sites
- protein sequences
- combinatorial optimization
- biological data
- molecular biology
- data mining
- memetic algorithm
- data mining tasks
- computational biology
- evolutionary algorithm
- optimization problems
- data mining applications
- benchmark problems
- knapsack problem
- sequence databases
- computational complexity
- feasible solution
- sequential patterns
- genetic algorithm