TRELLIS+: An Effective Approach for Indexing Genome-Scale Sequences Using Suffix Trees.
Benjarath PhoophakdeeMohammed Javeed ZakiPublished in: Pacific Symposium on Biocomputing (2008)
Keyphrases
- suffix tree
- genome scale
- string matching
- sequence similarity
- data structure
- nucleotide sequences
- inverted index
- pattern matching
- suffix array
- molecular biology
- sequence data
- computational methods
- index structure
- protein sequences
- database
- secondary structure
- sequential patterns
- inverted file
- protein function
- nearest neighbor
- information retrieval