GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences.
Yongchao LiuBertil SchmidtPublished in: Concurr. Comput. Pract. Exp. (2015)
Keyphrases
- sequence alignment
- gpu accelerated
- dna sequences
- binding sites
- dynamic programming
- tandem repeats
- transcription factors
- pairwise
- multiple sequence alignment
- multiple alignment
- biological sequences
- sequence data
- regulatory elements
- coding regions
- dna computing
- motif discovery
- gene expression
- human genome
- protein sequences
- statistical significance
- sequence patterns
- databases
- gene structure prediction
- amino acids
- phylogenetic analysis
- transcription factor binding sites
- protein families
- genomic sequences
- memory efficient
- protein structure
- machine learning