Binding Site Extraction by Similar Subgraphs Mining from Protein Molecular Surfaces and Its Application to Protein Classification.
Natsumi KurumataniHiroyuki MonjiTakenao OhkawaPublished in: Int. J. Artif. Intell. Tools (2014)
Keyphrases
- protein classification
- protein protein
- protein sequences
- virtual screening
- binding sites
- protein families
- drug discovery
- computational biology
- remote homology detection
- protein function
- sequence alignment
- similarity searching
- sequence analysis
- protein structure
- protein protein interactions
- secondary structure
- string kernels
- amino acid sequences
- sequence databases
- amino acids
- protein structure prediction
- knowledge discovery
- text mining
- protein interaction
- transcription factors
- high throughput
- motif discovery
- kernel methods
- data mining
- information extraction
- computational methods
- interaction networks
- data structure
- psi blast
- biological sequences
- dna sequences
- sequence data
- automatic extraction
- regulatory networks
- mass spectrometry
- gene expression
- drug design
- data mining tools
- pairwise
- graph mining