An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies.
Nan LiuHaitao JiangDaming ZhuBinhai ZhuPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2013)
Keyphrases
- matching algorithm
- times faster
- improved algorithm
- cost function
- np hard
- dynamic programming
- theoretical analysis
- computationally efficient
- detection algorithm
- preprocessing
- objective function
- experimental evaluation
- optimization algorithm
- approximation ratio
- path planning
- classification algorithm
- tree structure
- clustering method
- high accuracy
- segmentation algorithm
- convergence rate
- computational cost
- learning algorithm
- recognition algorithm
- randomized approximation
- selection algorithm
- piecewise constant
- monte carlo
- expectation maximization
- particle swarm optimization
- simulated annealing
- worst case
- probabilistic model
- multi objective
- computational complexity
- similarity measure