Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters.
David PellowDarya FilippovaCarl KingsfordPublished in: RECOMB (2016)
Keyphrases
- bloom filter
- sequence data
- join processing
- data structure
- sequence classification
- sequence analysis
- space efficient
- record linkage
- profile hidden markov models
- nucleotide sequences
- biological sequences
- membership queries
- knowledge management
- reservoir sampling
- index structure
- gene clusters
- neural network
- database
- binding sites
- signature file
- management system
- spatio temporal
- learning algorithm