Parallel Algorithms for Mapping Short degenerate and Weighted DNA Sequences to a Reference genome.
Costas S. IliopoulosMirka MillerSolon P. PissisPublished in: Int. J. Found. Comput. Sci. (2012)
Keyphrases
- parallel algorithm
- dna sequences
- reference genome
- single nucleotide polymorphisms
- high throughput sequencing
- regulatory elements
- human genome
- tandem repeats
- rna seq
- motif discovery
- binding sites
- sequence patterns
- biological sequences
- search algorithm
- high throughput
- sequence data
- genome wide
- transcription factors
- genomic sequences