RMI-DBG algorithm: A more agile iterative de Bruijn graph algorithm in short read genome assembly.
Zeinab Zare HosseiniShekoufeh Kolahdouz RahimiEsmaeil ForouzanAhmad BaraaniPublished in: J. Bioinform. Comput. Biol. (2021)
Keyphrases
- expectation maximization
- dynamic programming
- experimental evaluation
- computational cost
- cost function
- high accuracy
- matching algorithm
- tree structure
- detection algorithm
- preprocessing
- optimization algorithm
- probabilistic model
- learning algorithm
- graph structure
- times faster
- segmentation algorithm
- search space
- computational complexity
- optimal solution
- objective function
- markov random field
- np hard
- k means
- clustering method
- similarity measure
- neural network
- graph based algorithm