DNA motif alignment by evolving a population of Markov chains.
Chengpeng BiPublished in: BMC Bioinform. (2009)
Keyphrases
- markov chain
- dna sequences
- population size
- binding sites
- steady state
- motif discovery
- rna sequences
- biological sequences
- finite state
- sequence alignment
- monte carlo
- transition probabilities
- sequence analysis
- random walk
- monte carlo method
- state space
- markov model
- monte carlo simulation
- stationary distribution
- markov process
- sequence data
- markov processes
- transition matrix
- stochastic process
- probabilistic automata
- transcription factors
- transcription factor binding sites
- gene expression
- human genome
- computational biology
- non stationary
- machine learning