Effective Parallel Multicore-Optimized K-mers Counting Algorithm.
Tomás FarkasPeter KubánMária LuckáPublished in: SOFSEM (2016)
Keyphrases
- times faster
- learning algorithm
- objective function
- computational complexity
- search space
- detection algorithm
- computationally efficient
- parallel implementation
- computational cost
- dynamic programming
- cost function
- np hard
- preprocessing
- improved algorithm
- high accuracy
- single pass
- selection algorithm
- parallel implementations
- parallel version
- similarity measure
- highly efficient
- recognition algorithm
- matching algorithm
- tree structure
- clustering method
- k means
- optimization algorithm
- theoretical analysis
- data sets
- particle swarm optimization
- simulated annealing
- markov random field