MSPocket: an orientation-independent algorithm for the detection of ligand binding pockets.
Hongbo ZhuM. Teresa PisabarroPublished in: Bioinform. (2011)
Keyphrases
- detection algorithm
- dynamic programming
- high accuracy
- times faster
- matching algorithm
- detection method
- np hard
- experimental evaluation
- worst case
- learning algorithm
- optimization algorithm
- computationally efficient
- particle swarm optimization
- computational cost
- objective function
- simulated annealing
- theoretical analysis
- optimal solution
- expectation maximization
- graph cuts
- preprocessing
- ant colony optimization
- neural network